WebbPlot-level fern and lycophyte species richness were best explained by models allowing a link between regional environment and plot-level richness. A link between regional … WebbPlant species richness was investigated in 370 1m2-plots distributed over 37 sample areas and the surrounding landscape analyzed in a GIS. Results show that a few years after restoration there was higher plant species richness and lower homogenization, at the site scale, compared to the controls.
Introduction to Phyloseq Academic
Webb12 apr. 2024 · Seed addition also decreased unseeded resident species richness in fertilised and fenced plots (Figure 1b, Table S4d). FIGURE 3. Open in figure viewer … Webb4 nov. 2024 · I have a boxplot (see below) that I'd like to color by the variables according to a specified palette. I'm not sure how to color them as the code is based on the Phyloseq … cifre thèse
R code for ecological data analysis - University of Glasgow
WebbThe code I'm using is: ggplot (data, aes (x=luse, y=rich))+ geom_boxplot (mapping = NULL, data = NULL, stat = "boxplot", position = "dodge", outlier.colour = "red", outlier.shape = 16, … Webb17 apr. 2024 · 使用 plot-richness 函数功能。 虽然函数名包含单词 richness ，它通常是指样本或环境中物种/OTUs/分类单元的总数 (观察到的或估计的)，但这实际上是所有 alpha … WebbWe can plot the rarefaction curve for the observed ASVs in the entire data set. This is a way to check how has the richness captured in the sequencing effort. ggrare (physeq, step = 50, color="BodySite", label = "Sample", se = TRUE) phyloseq also allows you to easily plot alpha diversity, both by sample and by group cifrhs folios